First, you need to Upload the Flash .swf File to a Location your Server.
In this Example we Suppose than the File has been Uploaded in the media Directory.
Next Login to the Administrator Back end.
For TinyMCE Extended:
Extensions > Plugin Manager.
Select TinyMCE.
Functionality -> Extended.
Toggle Editor.
Click on the Media Symbol.
Select Flash from dropdown.
Fill in the .swf Path.